IL_8UJJ_141

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

GAU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJJ_141 not in the Motif Atlas

Homologous match to IL_8CRE_121

Geometric discrepancy: 0.1085

The information below is about IL_8CRE_121

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8UJJ|1|L5|G|4495
8UJJ|1|L5|A|4496
8UJJ|1|L5|U|4497
*
8UJJ|1|L5|A|4503
8UJJ|1|L5|C|4504
8UJJ|1|L5|C|4505

Current chains

Chain L5

28S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23