IL_8UJJ_146
3D structure
- PDB id
- 8UJJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.56 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJJ_146 not in the Motif Atlas
- Homologous match to IL_8P9A_344
- Geometric discrepancy: 0.1875
- The information below is about IL_8P9A_344
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8UJJ|1|L5|C|4596
8UJJ|1|L5|U|4597
8UJJ|1|L5|C|4598
8UJJ|1|L5|A|4599
8UJJ|1|L5|G|4600
8UJJ|1|L5|U|4601
8UJJ|1|L5|A|4602
8UJJ|1|L5|C|4603
*
8UJJ|1|L5|G|4608
8UJJ|1|L5|G|4609
8UJJ|1|L5|A|4610
8UJJ|1|L5|A|4611
8UJJ|1|L5|C|4612
8UJJ|1|L5|C|4613
8UJJ|1|L5|G|4614
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LH
- 60S ribosomal protein L9
- Chain LV
- 60S ribosomal protein L23
- Chain Lm
- Large ribosomal subunit protein eL40
Coloring options: