IL_8UJJ_198

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

8UJJ|1|S2|U|368, 8UJJ|1|S2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJJ_198 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.2401

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8UJJ|1|S2|U|366
8UJJ|1|S2|U|367
8UJJ|1|S2|U|368
8UJJ|1|S2|C|369
8UJJ|1|S2|G|370
8UJJ|1|S2|A|371
*
8UJJ|1|S2|U|393
8UJJ|1|S2|G|394

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11