IL_8UJJ_213
3D structure
- PDB id
- 8UJJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.56 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 8UJJ|1|S2|A|668
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UJJ_213 not in the Motif Atlas
- Homologous match to IL_8P9A_405
- Geometric discrepancy: 0.1381
- The information below is about IL_8P9A_405
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20847.1
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
8UJJ|1|S2|G|665
8UJJ|1|S2|U|666
8UJJ|1|S2|U|667
8UJJ|1|S2|A|668
8UJJ|1|S2|A|669
8UJJ|1|S2|A|670
8UJJ|1|S2|A|671
*
8UJJ|1|S2|U|1161
8UJJ|1|S2|C|1162
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SX
- 40S ribosomal protein S23
- Chain Sa
- 40S ribosomal protein S26
Coloring options: