IL_8UJK_010

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GCUCCC*GGCCC

Length

11 nucleotides

Bulged bases

8UJK|1|L5|C|172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJK|1|L5|G|169
8UJK|1|L5|C|170
8UJK|1|L5|U|171
8UJK|1|L5|C|172
8UJK|1|L5|C|173
8UJK|1|L5|C|174
*
8UJK|1|L5|G|262
8UJK|1|L5|G|263
8UJK|1|L5|C|264
8UJK|1|L5|C|265
8UJK|1|L5|C|266

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain Lh

60S ribosomal protein L35