IL_8UJK_011

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

8UJK|1|L5|C|183, 8UJK|1|L5|G|186, 8UJK|1|L5|G|188

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJK|1|L5|C|180
8UJK|1|L5|C|181
8UJK|1|L5|G|182
8UJK|1|L5|C|183
8UJK|1|L5|U|184
8UJK|1|L5|C|185
8UJK|1|L5|G|186
8UJK|1|L5|U|187
8UJK|1|L5|G|188
8UJK|1|L5|G|189
*
8UJK|1|L5|C|252
8UJK|1|L5|G|253
8UJK|1|L5|G|254
8UJK|1|L5|C|255
8UJK|1|L5|G|256

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37