IL_8UJK_036

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GAAGGUGGCU*AGUGUUACAGC

Length

21 nucleotides

Bulged bases

8UJK|1|L5|G|748, 8UJK|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJK|1|L5|G|745
8UJK|1|L5|A|746
8UJK|1|L5|A|747
8UJK|1|L5|G|748
8UJK|1|L5|G|749
8UJK|1|L5|U|750
8UJK|1|L5|G|751
8UJK|1|L5|G|752
8UJK|1|L5|C|753
8UJK|1|L5|U|754
*
8UJK|1|L5|A|909
8UJK|1|L5|G|910
8UJK|1|L5|U|911
8UJK|1|L5|G|912
8UJK|1|L5|U|913
8UJK|1|L5|U|914
8UJK|1|L5|A|915
8UJK|1|L5|C|916
8UJK|1|L5|A|917
8UJK|1|L5|G|918
8UJK|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a