IL_8UJK_047

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_047 not in the Motif Atlas

Geometric match to IL_1M5K_001

Geometric discrepancy: 0.3768

The information below is about IL_1M5K_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.1

Basepair signature

cWW-cWW-L-R-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

8UJK|1|L5|G|1425
8UJK|1|L5|G|1426
8UJK|1|L5|A|1427
8UJK|1|L5|U|1428
8UJK|1|L5|C|1429
*
8UJK|1|L5|G|1455
8UJK|1|L5|C|1456
8UJK|1|L5|G|1457
8UJK|1|L5|C|1458
8UJK|1|L5|A|1459
8UJK|1|L5|C|1460

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain Lb

Large ribosomal subunit protein eL29