IL_8UJK_057

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_057 not in the Motif Atlas

Homologous match to IL_8CRE_034

Geometric discrepancy: 0.0958

The information below is about IL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8UJK|1|L5|G|1586
8UJK|1|L5|G|1587
8UJK|1|L5|U|1588
8UJK|1|L5|C|1589
*
8UJK|1|L5|G|1605
8UJK|1|L5|U|1606
8UJK|1|L5|C|1607

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lj

60S ribosomal protein L37