IL_8UJK_069

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

UUGGGG*CGAUCUCA

Length

14 nucleotides

Bulged bases

8UJK|1|L5|U|1757, 8UJK|1|L5|G|1769

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJK|1|L5|U|1756
8UJK|1|L5|U|1757
8UJK|1|L5|G|1758
8UJK|1|L5|G|1759
8UJK|1|L5|G|1760
8UJK|1|L5|G|1761
*
8UJK|1|L5|C|1768
8UJK|1|L5|G|1769
8UJK|1|L5|A|1770
8UJK|1|L5|U|1771
8UJK|1|L5|C|1772
8UJK|1|L5|U|1773
8UJK|1|L5|C|1774
8UJK|1|L5|A|1775

Current chains

Chain L5

28S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like