IL_8UJK_083

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8UJK|1|L5|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_083 not in the Motif Atlas

Homologous match to IL_8P9A_284

Geometric discrepancy: 0.2792

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

8UJK|1|L5|G|2001
8UJK|1|L5|A|2002
8UJK|1|L5|G|2003
8UJK|1|L5|U|2004
8UJK|1|L5|G|2005
*
8UJK|1|L5|C|2014
8UJK|1|L5|U|2015
8UJK|1|L5|C|2016

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

Large ribosomal subunit protein uL11