IL_8UJK_090

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_090 not in the Motif Atlas

Homologous match to IL_8CRE_065

Geometric discrepancy: 0.09

The information below is about IL_8CRE_065

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8UJK|1|L5|G|2358
8UJK|1|L5|U|2359
8UJK|1|L5|A|2360
8UJK|1|L5|G|2361
8UJK|1|L5|U|2362
8UJK|1|L5|A|2363
8UJK|1|L5|G|2364
*
8UJK|1|L5|C|3858
8UJK|1|L5|G|3859
8UJK|1|L5|A|3860
8UJK|1|L5|A|3861
8UJK|1|L5|A|3862
8UJK|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17