IL_8UJK_098

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8UJK|1|L5|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_098 not in the Motif Atlas

Homologous match to IL_8P9A_297

Geometric discrepancy: 0.1549

The information below is about IL_8P9A_297

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8UJK|1|L5|C|2613
8UJK|1|L5|C|2614
*
8UJK|1|L5|G|2724
8UJK|1|L5|A|2725
8UJK|1|L5|G|2726

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34