IL_8UJK_106

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

8UJK|1|L5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_106 not in the Motif Atlas

Geometric match to IL_8P9A_305

Geometric discrepancy: 0.0858

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8UJK|1|L5|G|2847
8UJK|1|L5|G|2848
8UJK|1|L5|A|2849
8UJK|1|L5|A|2850
8UJK|1|L5|G|2851
8UJK|1|L5|U|2852
8UJK|1|L5|C|2853
8UJK|1|L5|G|2854
8UJK|1|L5|G|2855
*
8UJK|1|L5|C|3837
8UJK|1|L5|U|3838
8UJK|1|L5|G|3839
8UJK|1|L5|U|3840
8UJK|1|L5|C|3841

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23