IL_8UJK_116

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8UJK|1|L5|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_116 not in the Motif Atlas

Homologous match to IL_8CRE_090

Geometric discrepancy: 0.1229

The information below is about IL_8CRE_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8UJK|1|L5|U|3704
8UJK|1|L5|G|3705
*
8UJK|1|L5|U|3745
8UJK|1|L5|A|3746
8UJK|1|L5|A|3747
8UJK|1|L5|A|3748

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8