Loop IL_8UJK

3D structure

PDB id: 8UJK (explore in PDB, NAKB, or RNA 3D Hub)
Description: In situ HHT and CHX treated A-P-Z state 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.54 Å

Loop

Sequence: GAGGUGUAGAAUAAGUGGGAG*CCGCCGGUGAAAUACCACUACUC
Length: 44 nucleotides
Bulged bases: 8UJK|1|L5|G|3956, 8UJK|1|L5|A|3962, 8UJK|1|L5|A|3965, 8UJK|1|L5|G|3970, 8UJK|1|L5|C|4038, 8UJK|1|L5|G|4039, 8UJK|1|L5|G|4042, 8UJK|1|L5|U|4044, 8UJK|1|L5|G|4045, 8UJK|1|L5|A|4048, 8UJK|1|L5|U|4049, 8UJK|1|L5|C|4052, 8UJK|1|L5|A|4053, 8UJK|1|L5|C|4054, 8UJK|1|L5|U|4058
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8UJK|1|L5|G|3953
8UJK|1|L5|A|3954
8UJK|1|L5|G|3955
8UJK|1|L5|G|3956
8UJK|1|L5|U|3957
8UJK|1|L5|G|3958
8UJK|1|L5|U|3959
8UJK|1|L5|A|3960
8UJK|1|L5|G|3961
8UJK|1|L5|A|3962
8UJK|1|L5|A|3963
8UJK|1|L5|U|3964
8UJK|1|L5|A|3965
8UJK|1|L5|A|3966
8UJK|1|L5|G|3967
8UJK|1|L5|U|3968
8UJK|1|L5|G|3969
8UJK|1|L5|G|3970
8UJK|1|L5|G|3971
8UJK|1|L5|A|3972
8UJK|1|L5|G|3973
*
8UJK|1|L5|C|4037
8UJK|1|L5|C|4038
8UJK|1|L5|G|4039
8UJK|1|L5|C|4040
8UJK|1|L5|C|4041
8UJK|1|L5|G|4042
8UJK|1|L5|G|4043
8UJK|1|L5|U|4044
8UJK|1|L5|G|4045
8UJK|1|L5|A|4046
8UJK|1|L5|A|4047
8UJK|1|L5|A|4048
8UJK|1|L5|U|4049
8UJK|1|L5|A|4050
8UJK|1|L5|C|4051
8UJK|1|L5|C|4052
8UJK|1|L5|A|4053
8UJK|1|L5|C|4054
8UJK|1|L5|U|4055
8UJK|1|L5|A|4056
8UJK|1|L5|C|4057
8UJK|1|L5|U|4058
8UJK|1|L5|C|4059

Current chains

Chain L5: 28S rRNA

Nearby chains

Chain Li: 60S ribosomal protein L36
Chain Lz: 60S ribosomal protein L10a
Chain Zt: Transfer RNA; tRNA

IL_8UJK_129