IL_8UJK_141

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_141 not in the Motif Atlas

Homologous match to IL_8P9A_334

Geometric discrepancy: 0.1508

The information below is about IL_8P9A_334

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46637.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

20

Unit IDs

8UJK|1|L5|C|4453
8UJK|1|L5|G|4454
*
8UJK|1|L5|U|4526
8UJK|1|L5|G|4527
8UJK|1|L5|G|4528

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3