IL_8UJK_164

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GGAAACGG*CUCGCC

Length

14 nucleotides

Bulged bases

8UJK|1|L5|C|4895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJK|1|L5|G|4890
8UJK|1|L5|G|4891
8UJK|1|L5|A|4892
8UJK|1|L5|A|4893
8UJK|1|L5|A|4894
8UJK|1|L5|C|4895
8UJK|1|L5|G|4896
8UJK|1|L5|G|4897
*
8UJK|1|L5|C|4924
8UJK|1|L5|U|4925
8UJK|1|L5|C|4926
8UJK|1|L5|G|4927
8UJK|1|L5|C|4928
8UJK|1|L5|C|4929

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a