IL_8UJK_172

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_172 not in the Motif Atlas

Homologous match to IL_8CRE_141

Geometric discrepancy: 0.1964

The information below is about IL_8CRE_141

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8UJK|1|L5|A|5014
8UJK|1|L5|G|5015
8UJK|1|L5|A|5016
8UJK|1|L5|G|5017
*
8UJK|1|L5|C|5032
8UJK|1|L5|G|5033
8UJK|1|L5|A|5034
8UJK|1|L5|U|5035

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LW

Ribosomal protein L24

Chain SI

40S ribosomal protein S8