IL_8UJK_196

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

UGUG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_196 not in the Motif Atlas

Homologous match to IL_8CRE_401

Geometric discrepancy: 0.4426

The information below is about IL_8CRE_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15043.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

4

Unit IDs

8UJK|1|S2|U|152
8UJK|1|S2|G|153
8UJK|1|S2|U|154
8UJK|1|S2|G|155
*
8UJK|1|S2|U|163
8UJK|1|S2|A|164
8UJK|1|S2|G|165
8UJK|1|S2|A|166

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

Ribosomal protein L24

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24