IL_8UJK_197

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_197 not in the Motif Atlas

Geometric match to IL_8P9A_375

Geometric discrepancy: 0.3376

The information below is about IL_8P9A_375

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12697.1

Basepair signature

cWW-cWW-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8UJK|1|S2|C|188
8UJK|1|S2|U|189
8UJK|1|S2|G|190
8UJK|1|S2|A|191
8UJK|1|S2|C|192
*
8UJK|1|S2|G|207
8UJK|1|S2|G|208
8UJK|1|S2|A|209
8UJK|1|S2|U|210
8UJK|1|S2|G|211

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8