3D structure

PDB id
8UJK (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ HHT and CHX treated A-P-Z state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.54 Å

Loop

Sequence
UC*GGA
Length
5 nucleotides
Bulged bases
8UJK|1|S2|G|507
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UJK_209 not in the Motif Atlas
Homologous match to IL_8CRE_415
Geometric discrepancy: 0.1163
The information below is about IL_8CRE_415
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28408.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
60

Unit IDs

8UJK|1|S2|U|495
8UJK|1|S2|C|496
*
8UJK|1|S2|G|506
8UJK|1|S2|G|507
8UJK|1|S2|A|508

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SE
Small ribosomal subunit protein eS4, X isoform
Chain SJ
40S ribosomal protein S9
Chain SY
40S ribosomal protein S24

Coloring options:


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