IL_8UJK_212

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

8UJK|1|S2|A|536, 8UJK|1|S2|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_212 not in the Motif Atlas

Geometric match to IL_5XWP_001

Geometric discrepancy: 0.1603

The information below is about IL_5XWP_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

8UJK|1|S2|G|535
8UJK|1|S2|A|536
8UJK|1|S2|C|537
*
8UJK|1|S2|G|546
8UJK|1|S2|G|547
8UJK|1|S2|C|548

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

Small ribosomal subunit protein eS30