IL_8UJK_215

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8UJK|1|S2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_215 not in the Motif Atlas

Homologous match to IL_8CRE_422

Geometric discrepancy: 0.5156

The information below is about IL_8CRE_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8UJK|1|S2|G|606
8UJK|1|S2|U|607
8UJK|1|S2|C|608
*
8UJK|1|S2|G|635
8UJK|1|S2|C|636

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SX

40S ribosomal protein S23

Chain Se

Small ribosomal subunit protein eS30