IL_8UJK_221

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UJK_221 not in the Motif Atlas

Homologous match to IL_8P9A_412

Geometric discrepancy: 0.18

The information below is about IL_8P9A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

8UJK|1|S2|A|802
8UJK|1|S2|C|803
*
8UJK|1|S2|G|860
8UJK|1|S2|A|861
8UJK|1|S2|A|862
8UJK|1|S2|U|863

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SH

Small ribosomal subunit protein eS7

Chain SL

40S ribosomal protein S11

Chain SW

40S ribosomal protein S15a

Chain SX

40S ribosomal protein S23