IL_8UKB_045

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CU*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UKB_045 not in the Motif Atlas

Geometric match to IL_7MLX_001

Geometric discrepancy: 0.2017

The information below is about IL_7MLX_001

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8UKB|1|L5|C|1099
8UKB|1|L5|U|1100
*
8UKB|1|L5|G|1194
8UKB|1|L5|G|1195
8UKB|1|L5|G|1196

Current chains

Chain L5

28S rRNA

Nearby chains