IL_8UKB_112

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

8UKB|1|L5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UKB_112 not in the Motif Atlas

Geometric match to IL_8C3A_484

Geometric discrepancy: 0.0675

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

8UKB|1|L5|G|2847
8UKB|1|L5|G|2848
8UKB|1|L5|A|2849
8UKB|1|L5|A|2850
8UKB|1|L5|G|2851
8UKB|1|L5|U|2852
8UKB|1|L5|C|2853
8UKB|1|L5|G|2854
8UKB|1|L5|G|2855
*
8UKB|1|L5|C|3837
8UKB|1|L5|U|3838
8UKB|1|L5|G|3839
8UKB|1|L5|U|3840
8UKB|1|L5|C|3841

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23