IL_8UKB_188

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

8UKB|1|S2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UKB_188 not in the Motif Atlas

Geometric match to IL_6YML_002

Geometric discrepancy: 0.3398

The information below is about IL_6YML_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8UKB|1|S2|C|37
8UKB|1|S2|A|38
8UKB|1|S2|A|39
8UKB|1|S2|A|40
*
8UKB|1|S2|U|514
8UKB|1|S2|G|515
8UKB|1|S2|A|516
8UKB|1|S2|C|517
8UKB|1|S2|G|518

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9