IL_8UKB_267

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8UKB|1|S2|C|1701, 8UKB|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UKB_267 not in the Motif Atlas

Homologous match to IL_8C3A_470

Geometric discrepancy: 0.1022

The information below is about IL_8C3A_470

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8UKB|1|S2|C|1700
8UKB|1|S2|C|1701
8UKB|1|S2|G|1702
*
8UKB|1|S2|C|1833
8UKB|1|S2|A|1834
8UKB|1|S2|A|1835
8UKB|1|S2|G|1836

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CD

Serbp1

Chain SC

40S ribosomal protein S2

Chain Sa

40S ribosomal protein S26