IL_8UQL_048

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8UQL|1|D|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UQL_048 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.0804

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8UQL|1|D|U|1052
8UQL|1|D|G|1053
8UQL|1|D|C|1054
8UQL|1|D|A|1055
8UQL|1|D|U|1056
*
8UQL|1|D|A|1204
8UQL|1|D|U|1205
8UQL|1|D|G|1206

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 24 nt long spacer

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14