IL_8UQL_067

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UQL_067 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.0577

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8UQL|1|a|G|24
8UQL|1|a|U|25
8UQL|1|a|G|26
8UQL|1|a|G|27
8UQL|1|a|A|28
8UQL|1|a|U|29
8UQL|1|a|G|30
*
8UQL|1|a|C|510
8UQL|1|a|U|511
8UQL|1|a|G|512
8UQL|1|a|A|513
8UQL|1|a|A|514
8UQL|1|a|A|515
8UQL|1|a|C|516

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain i

50S ribosomal protein L32

Chain z

50S ribosomal protein L20