IL_8UQL_205

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAGG*CCAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UQL_205 not in the Motif Atlas

Geometric match to IL_8C3A_028

Geometric discrepancy: 0.3944

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8UQL|1|a|G|875
8UQL|1|a|C|876
8UQL|1|a|A|877
8UQL|1|a|A|878
8UQL|1|a|G|879
8UQL|1|a|G|880
*
8UQL|1|a|C|897
8UQL|1|a|C|898
8UQL|1|a|A|899
8UQL|1|a|A|900
8UQL|1|a|C|901
8UQL|1|a|C|902

Current chains

Chain a

23S rRNA

Nearby chains

Chain v

50S ribosomal protein L16