IL_8UQP_040

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

8UQP|1|D|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UQP_040 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.1222

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8UQP|1|D|G|925
8UQP|1|D|G|926
8UQP|1|D|G|927
*
8UQP|1|D|U|1390
8UQP|1|D|U|1391

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 24 nt long spacer

Chain B

Transfer RNA; tRNA