IL_8UQP_077

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8UQP|1|a|A|504, 8UQP|1|a|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UQP_077 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0676

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8UQP|1|a|G|481
8UQP|1|a|A|482
8UQP|1|a|A|483
8UQP|1|a|C|484
*
8UQP|1|a|G|496
8UQP|1|a|A|497
8UQP|1|a|G|498
8UQP|1|a|U|499
8UQP|1|a|G|500
8UQP|1|a|A|501
8UQP|1|a|A|502
8UQP|1|a|A|503
8UQP|1|a|A|504
8UQP|1|a|A|505
8UQP|1|a|G|506
8UQP|1|a|A|507
8UQP|1|a|A|508
8UQP|1|a|C|509

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22

Chain 3

50S ribosomal protein L24