IL_8UQP_202

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

8UQP|1|D|U|1030, 8UQP|1|D|C|1031, 8UQP|1|D|G|1032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UQP|1|D|G|1003
8UQP|1|D|A|1004
8UQP|1|D|A|1005
8UQP|1|D|G|1006
*
8UQP|1|D|U|1023
8UQP|1|D|G|1024
8UQP|1|D|U|1025
8UQP|1|D|G|1026
8UQP|1|D|C|1027
8UQP|1|D|C|1028
8UQP|1|D|U|1029
8UQP|1|D|U|1030
8UQP|1|D|C|1031
8UQP|1|D|G|1032
8UQP|1|D|G|1033
8UQP|1|D|G|1034
8UQP|1|D|A|1035
8UQP|1|D|A|1036
8UQP|1|D|C|1037

Current chains

Chain D

16S rRNA

Nearby chains

Chain AE

DNA-directed RNA polymerase subunit beta'

Chain S

30S ribosomal protein S14