3D structure

PDB id
8URM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CAG*CGAUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8URM_008 not in the Motif Atlas
Geometric match to IL_5J7L_252
Geometric discrepancy: 0.1581
The information below is about IL_5J7L_252
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47972.1
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
1

Unit IDs

8URM|1|1|C|269
8URM|1|1|A|270
8URM|1|1|G|271
*
8URM|1|1|C|366
8URM|1|1|G|367
8URM|1|1|A|368
8URM|1|1|U|369
8URM|1|1|G|370

Current chains

Chain 1
13S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.297 s