IL_8URM_019

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_019 not in the Motif Atlas

Geometric match to IL_9DFE_019

Geometric discrepancy: 0.096

The information below is about IL_9DFE_019

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8URM|1|1|U|703
8URM|1|1|G|704
8URM|1|1|A|705
8URM|1|1|A|706
8URM|1|1|G|707
*
8URM|1|1|U|724
8URM|1|1|G|725
8URM|1|1|G|726
8URM|1|1|A|727
8URM|1|1|G|728

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2