IL_8URM_031

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

8URM|1|1|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_031 not in the Motif Atlas

Geometric match to IL_3B31_001

Geometric discrepancy: 0.269

The information below is about IL_3B31_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8URM|1|1|G|880
8URM|1|1|G|881
*
8URM|1|1|U|895
8URM|1|1|A|896
8URM|1|1|C|897

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain M

50S ribosomal protein L16