IL_8URM_041

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

8URM|1|1|A|1088, 8URM|1|1|A|1089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_041 not in the Motif Atlas

Geometric match to IL_6IV9_001

Geometric discrepancy: 0.1992

The information below is about IL_6IV9_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8URM|1|1|G|1087
8URM|1|1|A|1088
8URM|1|1|A|1089
8URM|1|1|A|1090
*
8URM|1|1|U|1101
8URM|1|1|C|1102

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L36