IL_8URM_062

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_062 not in the Motif Atlas

Geometric match to IL_8CRE_081

Geometric discrepancy: 0.0973

The information below is about IL_8CRE_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

8URM|1|1|G|1666
8URM|1|1|G|1667
8URM|1|1|A|1668
8URM|1|1|A|1669
*
8URM|1|1|U|1993
8URM|1|1|C|1994

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain K

50S ribosomal protein L14