IL_8URM_065

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8URM|1|1|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_065 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0938

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8URM|1|1|C|1686
8URM|1|1|G|1687
8URM|1|1|U|1688
8URM|1|1|A|1689
8URM|1|1|A|1690
8URM|1|1|C|1691
*
8URM|1|1|G|1696
8URM|1|1|G|1697
8URM|1|1|A|1698
8URM|1|1|G|1699
8URM|1|1|A|1700
8URM|1|1|A|1701
8URM|1|1|G|1702

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2