IL_8URM_080

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

8URM|1|1|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_080 not in the Motif Atlas

Geometric match to IL_4WF9_081

Geometric discrepancy: 0.089

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

8URM|1|1|A|2070
8URM|1|1|A|2071
*
8URM|1|1|U|2438
8URM|1|1|A|2439
8URM|1|1|C|2440
8URM|1|1|U|2441

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain B

50S ribosomal protein L2