IL_8URM_094

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

8URM|1|1|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_094 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.137

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8URM|1|1|A|2459
8URM|1|1|U|2460
8URM|1|1|A|2461
*
8URM|1|1|U|2489
8URM|1|1|G|2490
8URM|1|1|U|2491
8URM|1|1|U|2492
8URM|1|1|U|2493

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain M

50S ribosomal protein L16