3D structure

PDB id
8URM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8URM_095 not in the Motif Atlas
Geometric match to IL_8P9A_333
Geometric discrepancy: 0.1462
The information below is about IL_8P9A_333
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

8URM|1|1|C|2466
8URM|1|1|C|2467
8URM|1|1|A|2468
8URM|1|1|A|2469
8URM|1|1|G|2470
*
8URM|1|1|C|2480
8URM|1|1|G|2481
8URM|1|1|A|2482
8URM|1|1|C|2483
8URM|1|1|G|2484

Current chains

Chain 1
13S ribosomal RNA

Nearby chains

Chain 6
Transfer RNA; tRNA
Chain M
50S ribosomal protein L16
Chain f
50S ribosomal protein L36

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