IL_8URM_100

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8URM|1|1|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_100 not in the Motif Atlas

Geometric match to IL_9C75_002

Geometric discrepancy: 0.2926

The information below is about IL_9C75_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8URM|1|1|C|2591
8URM|1|1|G|2592
*
8URM|1|1|C|2601
8URM|1|1|A|2602
8URM|1|1|G|2603

Current chains

Chain 1

13S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain 6

Transfer RNA; tRNA

Chain B

50S ribosomal protein L2