3D structure

PDB id
8URM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UU*ACUG
Length
6 nucleotides
Bulged bases
8URM|1|1|C|2712, 8URM|1|1|U|2713
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8URM_105 not in the Motif Atlas
Geometric match to IL_5J7L_349
Geometric discrepancy: 0.0926
The information below is about IL_5J7L_349
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_42626.2
Basepair signature
cWW-cWW
Number of instances in this motif group
14

Unit IDs

8URM|1|1|U|2695
8URM|1|1|U|2696
*
8URM|1|1|A|2711
8URM|1|1|C|2712
8URM|1|1|U|2713
8URM|1|1|G|2714

Current chains

Chain 1
13S ribosomal RNA

Nearby chains

Chain N
50S ribosomal protein L17
Chain P
Large ribosomal subunit protein bL19

Coloring options:


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