IL_8URM_131

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

8URM|1|2|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_131 not in the Motif Atlas

Geometric match to IL_4LFB_017

Geometric discrepancy: 0.2736

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8URM|1|2|U|409
8URM|1|2|G|410
8URM|1|2|A|411
8URM|1|2|A|412
8URM|1|2|G|413
8URM|1|2|A|414
8URM|1|2|A|415
8URM|1|2|G|416
*
8URM|1|2|U|427
8URM|1|2|G|428
8URM|1|2|U|429
8URM|1|2|A|430
8URM|1|2|A|431
8URM|1|2|A|432
8URM|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4