IL_8URM_134

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8URM|1|2|A|532, 8URM|1|2|U|534, 8URM|1|2|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_134 not in the Motif Atlas

Geometric match to IL_5J7L_025

Geometric discrepancy: 0.3289

The information below is about IL_5J7L_025

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8URM|1|2|G|515
8URM|1|2|PSU|516
8URM|1|2|G|517
8URM|1|2|C|518
8URM|1|2|C|519
8URM|1|2|A|520
8URM|1|2|G|521
*
8URM|1|2|C|528
8URM|1|2|G|529
8URM|1|2|G|530
8URM|1|2|U|531
8URM|1|2|A|532
8URM|1|2|A|533
8URM|1|2|U|534
8URM|1|2|A|535
8URM|1|2|C|536

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

mRNA

Chain 6

Transfer RNA; tRNA

Chain h

30S ribosomal protein S3

Chain q

Small ribosomal subunit protein uS12