IL_8URM_135

3D structure

PDB id

8URM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8URM|1|2|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8URM_135 not in the Motif Atlas

Geometric match to IL_5J7L_026

Geometric discrepancy: 0.0991

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8URM|1|2|C|569
8URM|1|2|G|570
8URM|1|2|U|571
8URM|1|2|A|572
8URM|1|2|A|573
8URM|1|2|A|574
8URM|1|2|G|575
*
8URM|1|2|C|880
8URM|1|2|G|881

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

Small ribosomal subunit protein uS8

Chain q

Small ribosomal subunit protein uS12

Chain v

Small ribosomal subunit protein uS17