IL_8UTI_002

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

8UTI|1|A|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_002 not in the Motif Atlas

Homologous match to IL_8P9A_232

Geometric discrepancy: 0.0941

The information below is about IL_8P9A_232

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8UTI|1|A|A|13
8UTI|1|A|U|14
8UTI|1|A|C|15
*
8UTI|1|C|G|144
8UTI|1|C|U|145

Current chains

Chain A

25S rRNA

Chain C

5.8S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L8-A

Chain LP

60S ribosomal protein L15-A

Chain LZ

60S ribosomal protein L25